Introduction | Example using Z scores matrix as input | Example using two sided P-Values as input | Diagnostic Plots - how to identify model misfit in ztobins and twosided.PValues.tobins | Example for using clusters | Appendix: repfdr on clusters algorithm
Package: repfdr 1.2.3
Ruth Heller
repfdr: Replicability Analysis for Multiple Studies of High Dimension
Estimation of Bayes and local Bayes false discovery rates for replicability analysis (Heller & Yekutieli, 2014 <doi:10.1214/13-AOAS697> ; Heller at al., 2015 <doi:10.1093/bioinformatics/btu434>).
Authors:
repfdr_1.2.3.tar.gz
repfdr_1.2.3.zip(r-4.7)repfdr_1.2.3.zip(r-4.6)repfdr_1.2.3.zip(r-4.5)
repfdr_1.2.3.tgz(r-4.6-x86_64)repfdr_1.2.3.tgz(r-4.6-arm64)repfdr_1.2.3.tgz(r-4.5-x86_64)repfdr_1.2.3.tgz(r-4.5-arm64)
repfdr_1.2.3.tar.gz(r-4.7-arm64)repfdr_1.2.3.tar.gz(r-4.7-x86_64)repfdr_1.2.3.tar.gz(r-4.6-arm64)repfdr_1.2.3.tar.gz(r-4.6-x86_64)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
repfdr/json (API)
| # Install 'repfdr' in R: |
| install.packages('repfdr', repos = c('https://barakbri.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/barakbri/repfdr/issues
Datasets:
- bz_sim - Simulated data set - input objects to main function
- hmat_sim - Simulated data set - indicators of association status matrix
- pbz_sim - Simulated data set - input objects to main function
- Pi - Estimation of the prior probabilities for each association status vector.
- SNPlocations - Three GWAS studies SNPs locations and data
- zmat_sim - Simulated data set
Last updated from:7976283403. Checks:11 NOTE, 1 OK, 1 FAIL. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-arm64 | NOTE | 1296 | ||
| linux-devel-x86_64 | NOTE | 112 | ||
| source / vignettes | OK | 129 | ||
| linux-release-arm64 | NOTE | 147 | ||
| linux-release-x86_64 | NOTE | 605 | ||
| macos-release-arm64 | NOTE | 164 | ||
| macos-release-x86_64 | NOTE | 207 | ||
| macos-oldrel-arm64 | NOTE | 149 | ||
| macos-oldrel-x86_64 | NOTE | 295 | ||
| windows-devel | NOTE | 102 | ||
| windows-release | NOTE | 96 | ||
| windows-oldrel | NOTE | 114 | ||
| wasm-release | FAIL | 92 |
Exports:em.controlhconfigsldrmanhattanpiemrepfdrtwosided.PValues.tobinsztobins
Dependencies:Rcpp
